Build contact maps from pairs files using PretextMap, Juicertools, and Cooler
6 components; 2 pipelines
Available Subworkflows
Subworkflows combine modules into reusable groups of processes for Nextflow DSL2 pipelines. These subworkflows are maintained in the sanger-tol/nf-core-modules repository. For guidance on writing subworkflows, see the nf-core documentation.
2 subworkflows; Clear filters
Regenerate a Pretext contact map after manual curation in PretextView. Corrects the curated AGP
onto the input assembly (pretext2asm), remaps Hi-C contacts with juicerc, builds a pairs file
(pretext/makepairs), and runs pretextmap.
4 components; 0 pipelines