Available Subworkflows

Subworkflows combine modules into reusable groups of processes for Nextflow DSL2 pipelines. These subworkflows are maintained in the sanger-tol/nf-core-modules repository. For guidance on writing subworkflows, see the nf-core documentation.

3 subworkflows; Clear filters

busco_gene

busco bedgraph qc completeness tabix

Assess a genome FASTA with BUSCO using a chosen lineage and optional local lineage database path, then emit BUSCO gene coordinates as three bedGraph-style tables (Complete, Duplicated, Fragmented). Optionally bgzip/tabix those bedGraph files.

3 components; 0 pipelines

telo_finder

telomere windows regions fasta tabix

Run telomere/findtelomere on an assembly and motif string; optionally bgzip/tabix strand BED (*.fwd.telomere.bed, *.rev.telomere.bed) and windows files (*.windows or *.fwd.windows / *.rev.windows).

2 components; 1 pipelines