Description

Computes histograms (default), per-base reports (-d) and BEDGRAPH (-bg) summaries of feature coverage (e.g., aligned sequences) for a given genome.

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

sizes (file)

Tab-delimited table of chromosome names in the first column and chromosome sizes in the second column

extension (string)

Extension of the output file (e. g., ".bg", ".bedgraph", ".txt", ".tab", etc.) It is set arbitrarily by the user and corresponds to the file format which depends on arguments.

sort (boolean)

Sort the output

Output

Name
Description
Pattern

0 ()

0 ()

Tools

bedtools Documentation

A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.

License: MIT
nf-core pipelines with this module
curationpretexttreeval
Authors