Description

If you are like many computer users, you would frequently like to make changes in various text files wherever certain patterns appear, or extract data from parts of certain lines while discarding the rest. The job is easy with awk, especially the GNU implementation gawk.

Input

Name
Description
Pattern

0 ()

1 ()

program_file (file)

Optional file containing logic for awk to execute. If you don't wish to use a file, you can use ext.args2 to specify the logic.

*

disable_redirect_output (boolean)

Disable the redirection of awk output to a given file. This is useful if you want to use awk's built-in redirect to write files instead of the shell's redirect.

Output

Name
Description
Pattern

0 ()

0 ()

Tools

nf-core pipelines with this module
curationpretextgenomeassemblymetagenomeassemblytreeval
Authors