Description

A versatile pairwise aligner for genomic and spliced nucleotide sequences

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

bam_format (boolean)

Specify that output should be in BAM format

bam_index_extension (string)

BAM alignment index extension (e.g. "bai")

cigar_paf_format (boolean)

Specify that output CIGAR should be in PAF format

cigar_bam (boolean)

Write CIGAR with >65535 ops at the CG tag. This is recommended when doing XYZ (https://github.com/lh3/minimap2#working-with-65535-cigar-operations)

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

minimap2 Documentation

A versatile pairwise aligner for genomic and spliced nucleotide sequences.

License: MIT
nf-core pipelines with this module
asccblobtoolkitcurationpretexteargenealignmentgenomeassemblymetagenomeassemblyreadmappingtreevalvariantcalling
Authors