Description

Index FASTA file, and optionally generate a file of chromosome sizes

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

get_sizes (boolean)

use cut to get the sizes of the index (true) or not (false)

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

samtools Documentation

SAMtools is a set of utilities for interacting with and post-processing short DNA sequence read alignments in the SAM, BAM and CRAM formats, written by Heng Li. These files are generated as output by short read aligners like BWA.

doi: 10.1093/bioinformatics/btp352License: MIT
nf-core pipelines with this module
ascccurationpretextensemblgenedownloadensemblrepeatdownloadgenealignmentgenomeassemblygenomenoteinsdcdownloadreadmappingtreevalvariantcalling
Authors