Description

Generate a bed file containing gaps and their length

Input

Name
Description
Pattern

ch_reference (file)

Structure [ val(meta), path(reference) ] Meta is the Groovy Map containing sample information Reference is the fasta for analysis

val_run_bgzip (boolean)

Control running of htslib/bgziptabix with boolean

Output

Name
Description
Pattern

gap_file (file)

Structure: [ val(meta), path(gap_file) ] Bed file containing gap location and lengths

gap_and_index (file)

Structure: [ val(meta), path(gap), path(gap_index) ] CSI index for the gap file

Components

Command copied!