Merge sorted fixmated BAM files with reference to an assembly, then optionally mark duplicates
3 components; 5 pipelines
Available Subworkflows
Subworkflows combine modules into reusable groups of processes for Nextflow DSL2 pipelines. These subworkflows are maintained in the sanger-tol/nf-core-modules repository. For guidance on writing subworkflows, see the nf-core documentation.
6 subworkflows; Clear filters
Maps Hi-C reads in unaligned CRAM format to a set of references.
8 components; 4 pipelines
Align 10X data using Longranger and FreeBayes to a genome assembly and polish
13 components; 1 pipelines