Description

Generate ancestral linkage plots against an input assembly

Input

Name
Description
Pattern

reference (file)

Structure [ val(meta), path(reference) ] Meta is the Groovy Map containing sample information Reference is the fasta for analysis

ancestral_table (file)

Structure [ val(meta), path(ancestral_table) ] Meta is the Groovy Map containing sample information ancestral_table is an ancestral linkage table

busco_full_table (file)

Structure [ val(meta), path(busco_full_table) ] Meta is the Groovy Map containing sample information busco_full_table is the full_table output from busco

Output

Name
Description
Pattern

ancestral_png_plot (file)

Structure: [ val(meta), path(png_plot) ] PNG plot of linkage groups against input assembly

ancestral_pdf_plot (file)

Structure: [ val(meta), path(pdf_plot) ] PDF plot of linkage groups against input assembly

ancestral_complete_location (file)

Structure: [ val(meta), path(comp_location) ] TSV file containing complete busco locations

ancestral_duplicate_location (file)

Structure: [ val(meta), path(dup_location) ] TSV file containing duplicate busco locations.

ancestral_summary (file)

Structure: [ val(meta), path(summary) ] TSV file containing a summary of all data.

Components

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