Available Subworkflows
Subworkflows combine modules into reusable groups of processes for Nextflow DSL2 pipelines. These subworkflows are maintained in the sanger-tol/nf-core-modules repository. For guidance on writing subworkflows, see the nf-core documentation.
4 subworkflows; Clear filters
Assess a genome FASTA with BUSCO using a chosen lineage and optional local lineage database path, then emit BUSCO gene coordinates as three bedGraph-style tables (Complete, Duplicated, Fragmented). Optionally bgzip/tabix those bedGraph files.
3 components; 0 pipelines
Evaluate a number of standard metrics for a genome assembly, including basic statistics, MerquryFK for completeness/QV scores, and BUSCO
4 components; 1 pipelines
Runs BUSCO with the relevant lineages
3 components; 1 pipelines