Description

Generate a bigwig file containing repeat density graph

Input

Name
Description
Pattern

ch_reference (file)

Structure [ val(meta), path(reference) ] Meta is the Groovy Map containing sample information Reference is the fasta for analysis

ch_chrom_sizes (file)

Structure: [ val(meta), path(sizes) ] Input chromosome sizes file - a TSV with two columns, name and size.

Output

Name
Description
Pattern

repeat_density (file)

Structure: [ val(meta), path(repeat_density) ] Bigwig file containing repeat density graph

repeat_density_tabix (file)

Structure: [ val(meta), path(repeat_density_tabix) ] Tabix index for the repeat density .bed file

Components

Command copied!