Description

Runs BUSCO with the relevant lineages

Input

Name
Description
Pattern

ch_reference (file)

Structure: [ val(meta), path(pairs) ]

*.(fasta|fa|fna)

val_odb_directory (string)

Path to directory containing lineages folder)

val_mapping_directory (string)

Path to busco_odb_mapping folder, shipped with APISCRIPTS_GETLINEAGEODBS

val_output_dir (string)

Output directory for the restructure busco directory

val_restructure_busco_dir (boolean)

Whether to restructure the busco directory

Output

Name
Description
Pattern

odb_csv (file)

CSV file containing the ODB search results. Structure: [ val(meta), path(pretext) ]

*.csv

busco_full_table (file)

BUSCO full table files Structure: [ val(meta), path(busco_full_table) ]

*.tsv

busco_output (dir)

Directory containing the BUSCO output files. Structure: [ val(meta), path(busco_output) ]

*

restructured_output (dir)

Restructured output directory containing the BUSCO output files. Structure: [ val(meta), path(output_directory) ]

Components

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