Available Modules

Modules are the building stones of all DSL2 nf-core blocks. You can find more info from nf-core website, if you would like to write your own module.

  • fasta 2
  • salmonella 2
  • fastq 1
  • bacteria 1
  • genotype 1
  • prokaryote 1
  • subtyping 1
  • Salmonella enterica 1
  • Mykrobe 1
  • Salmonella Typhi 1
  • sertotype 1
  • bam 0
  • vcf 0
  • genomics 0
  • metagenomics 0
  • genome 0
  • index 0
  • alignment 0
  • reference 0
  • assembly 0
  • bed 0
  • gatk4 0
  • cram 0
  • sort 0
  • sam 0
  • structural variants 0
  • variant calling 0
  • annotation 0
  • database 0
  • align 0
  • merge 0
  • filter 0
  • gff 0
  • map 0
  • statistics 0
  • coverage 0
  • qc 0
  • variants 0
  • classification 0
  • classify 0
  • nanopore 0
  • quality control 0
  • download 0
  • gtf 0
  • cnv 0
  • split 0
  • MSA 0
  • k-mer 0
  • contamination 0
  • variant 0
  • taxonomy 0
  • taxonomic profiling 0
  • gfa 0
  • sentieon 0
  • somatic 0
  • pacbio 0
  • convert 0
  • conversion 0
  • clustering 0
  • proteomics 0
  • quality 0
  • binning 0
  • count 0
  • copy number 0
  • ancient DNA 0
  • single-cell 0
  • VCF 0
  • imputation 0
  • bedtools 0
  • trimming 0
  • phylogeny 0
  • contigs 0
  • mags 0
  • build 0
  • graph 0
  • long reads 0
  • kmer 0
  • isoseq 0
  • gvcf 0
  • sv 0
  • bcftools 0
  • bisulfite 0
  • variation graph 0
  • reporting 0
  • bqsr 0
  • illumina 0
  • table 0
  • long-read 0
  • picard 0
  • indexing 0
  • wgs 0
  • rnaseq 0
  • databases 0
  • cna 0
  • consensus 0
  • bisulphite 0
  • QC 0
  • methylseq 0
  • protein 0
  • methylation 0
  • compression 0
  • stats 0
  • visualisation 0
  • serotype 0
  • phage 0
  • openms 0
  • metrics 0
  • tsv 0
  • imaging 0
  • demultiplex 0
  • 5mC 0
  • taxonomic classification 0
  • antimicrobial resistance 0
  • sequences 0
  • mapping 0
  • depth 0
  • bins 0
  • cluster 0
  • histogram 0
  • WGBS 0
  • scWGBS 0
  • pairs 0
  • searching 0
  • pangenome graph 0
  • structure 0
  • expression 0
  • aDNA 0
  • protein sequence 0
  • base quality score recalibration 0
  • amr 0
  • plot 0
  • markduplicates 0
  • haplotype 0
  • DNA methylation 0
  • neural network 0
  • matrix 0
  • palaeogenomics 0
  • archaeogenomics 0
  • repeat 0
  • mmseqs2 0
  • mappability 0
  • db 0
  • samtools 0
  • machine learning 0
  • iCLIP 0
  • checkm 0
  • annotate 0
  • bwa 0
  • damage 0
  • completeness 0
  • metagenome 0
  • filtering 0
  • virus 0
  • LAST 0
  • gzip 0
  • validation 0
  • transcript 0
  • biscuit 0
  • low-coverage 0
  • bcf 0
  • bisulfite sequencing 0
  • cooler 0
  • aligner 0
  • mag 0
  • spatial 0
  • blast 0
  • decompression 0
  • ncbi 0
  • newick 0
  • umi 0
  • glimpse 0
  • population genetics 0
  • bismark 0
  • gff3 0
  • hmmsearch 0
  • evaluation 0
  • gene 0
  • segmentation 0
  • mkref 0
  • peaks 0
  • msa 0
  • hmmer 0
  • seqkit 0
  • complexity 0
  • example 0
  • phasing 0
  • genotyping 0
  • ucsc 0
  • sequence 0
  • transcriptome 0
  • kraken2 0
  • dedup 0
  • germline 0
  • mitochondria 0
  • demultiplexing 0
  • differential 0
  • snp 0
  • feature 0
  • deduplication 0
  • mirna 0
  • antimicrobial resistance genes 0
  • single 0
  • plasmid 0
  • antimicrobial peptides 0
  • pangenome 0
  • splicing 0
  • json 0
  • multiple sequence alignment 0
  • cnvkit 0
  • scRNA-seq 0
  • prediction 0
  • low frequency variant calling 0
  • kmers 0
  • tumor-only 0
  • NCBI 0
  • duplicates 0
  • short-read 0
  • report 0
  • vsearch 0
  • bedGraph 0
  • svtk 0
  • isolates 0
  • amps 0
  • de novo 0
  • diversity 0
  • tabular 0
  • single cell 0
  • text 0
  • sourmash 0
  • call 0
  • FASTQ 0
  • fragment 0
  • csv 0
  • cat 0
  • mem 0
  • concatenate 0
  • 3-letter genome 0
  • extract 0
  • ptr 0
  • indels 0
  • mutect2 0
  • microbiome 0
  • counts 0
  • query 0
  • view 0
  • clipping 0
  • coptr 0
  • deamination 0
  • mpileup 0
  • interval 0
  • riboseq 0
  • visualization 0
  • summary 0
  • MAF 0
  • antibiotic resistance 0
  • benchmark 0
  • detection 0
  • idXML 0
  • de novo assembly 0
  • arg 0
  • gridss 0
  • wxs 0
  • adapters 0
  • profiling 0
  • structural 0
  • profile 0
  • merging 0
  • kallisto 0
  • preprocessing 0
  • containment 0
  • deep learning 0
  • interval_list 0
  • rna 0
  • peak-calling 0
  • compare 0
  • ranking 0
  • genmod 0
  • bedgraph 0
  • enrichment 0
  • happy 0
  • read depth 0
  • HiFi 0
  • CLIP 0
  • hmmcopy 0
  • haplotypecaller 0
  • biosynthetic gene cluster 0
  • ccs 0
  • HMM 0
  • fastx 0
  • microarray 0
  • sequencing 0
  • mtDNA 0
  • snps 0
  • copy number alteration calling 0
  • hybrid capture sequencing 0
  • targeted sequencing 0
  • DNA sequencing 0
  • diamond 0
  • SV 0
  • miscoding lesions 0
  • palaeogenetics 0
  • archaeogenetics 0
  • sample 0
  • bigwig 0
  • bin 0
  • gsea 0
  • family 0
  • bgzip 0
  • genome assembler 0
  • hic 0
  • ganon 0
  • quantification 0
  • reference-free 0
  • compress 0
  • paf 0
  • ancestry 0
  • public datasets 0
  • microsatellite 0
  • fgbio 0
  • reads 0
  • ngscheckmate 0
  • matching 0
  • STR 0
  • phylogenetic placement 0
  • BGC 0
  • cut 0
  • circrna 0
  • malt 0
  • ont 0
  • image 0
  • umitools 0
  • abundance 0
  • DNA sequence 0
  • ampir 0
  • logratio 0
  • propr 0
  • bedpe 0
  • redundancy 0
  • add 0
  • sketch 0
  • parsing 0
  • xeniumranger 0
  • telomere 0
  • normalization 0
  • retrotransposon 0
  • chunk 0
  • transcriptomics 0
  • ATAC-seq 0
  • resistance 0
  • isomir 0
  • fungi 0
  • pypgx 0
  • bcl2fastq 0
  • union 0
  • relatedness 0
  • hidden Markov model 0
  • quality trimming 0
  • atac-seq 0
  • fai 0
  • wig 0
  • bacterial 0
  • ataqv 0
  • somatic variants 0
  • transposons 0
  • chip-seq 0
  • rna_structure 0
  • intervals 0
  • RNA 0
  • converter 0
  • mzml 0
  • adapter trimming 0
  • highly_multiplexed_imaging 0
  • prokka 0
  • ambient RNA removal 0
  • panel 0
  • chromosome 0
  • fastk 0
  • genomes 0
  • duplication 0
  • mlst 0
  • PacBio 0
  • PCA 0
  • scores 0
  • uLTRA 0
  • rsem 0
  • survivor 0
  • popscle 0
  • gene expression 0
  • fingerprint 0
  • repeat expansion 0
  • UMI 0
  • comparisons 0
  • pseudoalignment 0
  • organelle 0
  • krona chart 0
  • entrez 0
  • complement 0
  • tabix 0
  • structural_variants 0
  • krona 0
  • typing 0
  • dictionary 0
  • remove 0
  • lineage 0
  • pangolin 0
  • covid 0
  • pan-genome 0
  • pairsam 0
  • replace 0
  • angsd 0
  • mcmicro 0
  • html 0
  • cfDNA 0
  • gatk4spark 0
  • image_analysis 0
  • dna 0
  • genotype-based deconvoltion 0
  • plink2 0
  • roh 0
  • insert 0
  • png 0
  • amplicon sequencing 0
  • notebook 0
  • fam 0
  • reports 0
  • bim 0
  • kraken 0
  • variant_calling 0
  • DRAMP 0
  • deeparg 0
  • cool 0
  • cut up 0
  • untar 0
  • hi-c 0
  • uncompress 0
  • unzip 0
  • zip 0
  • eukaryotes 0
  • shapeit 0
  • archiving 0
  • ligate 0
  • checkv 0
  • dump 0
  • amplify 0
  • polishing 0
  • benchmarking 0
  • macrel 0
  • score 0
  • distance 0
  • long_read 0
  • genome mining 0
  • genome assembly 0
  • identity 0
  • transcripts 0
  • host 0
  • bamtools 0
  • minimap2 0
  • lossless 0
  • prokaryotes 0
  • kinship 0
  • mkfastq 0
  • informative sites 0
  • observations 0
  • virulence 0
  • nucleotide 0
  • wastewater 0
  • clean 0
  • indel 0
  • miRNA 0
  • C to T 0
  • bwameth 0
  • amplicon sequences 0
  • fusion 0
  • chimeras 0
  • spaceranger 0
  • sylph 0
  • windowmasker 0
  • npz 0
  • subsample 0
  • mapper 0
  • das tool 0
  • arriba 0
  • guide tree 0
  • das_tool 0
  • combine 0
  • spark 0
  • neubi 0
  • fcs-gx 0
  • prefetch 0
  • cellranger 0
  • RNA-seq 0
  • pileup 0
  • CRISPR 0
  • aln 0
  • small indels 0
  • SNP 0
  • bakta 0
  • microbes 0
  • vrhyme 0
  • bracken 0
  • krakenuniq 0
  • barcode 0
  • primer 0
  • metamaps 0
  • pair 0
  • regression 0
  • interactive 0
  • krakentools 0
  • lift 0
  • interactions 0
  • serogroup 0
  • functional analysis 0
  • genetics 0
  • lofreq 0
  • reformat 0
  • taxids 0
  • gene set 0
  • dereplicate 0
  • repeats 0
  • haplogroups 0
  • ome-tif 0
  • MCMICRO 0
  • trancriptome 0
  • tama 0
  • gstama 0
  • mirdeep2 0
  • RNA sequencing 0
  • hla 0
  • gene set analysis 0
  • frame-shift correction 0
  • pigz 0
  • phase 0
  • standardise 0
  • smrnaseq 0
  • concordance 0
  • standardization 0
  • Pharmacogenetics 0
  • long-read sequencing 0
  • hlala 0
  • screen 0
  • refine 0
  • khmer 0
  • bustools 0
  • taxon name 0
  • zlib 0
  • differential expression 0
  • find 0
  • variation 0
  • polyA_tail 0
  • ampgram 0
  • maximum likelihood 0
  • hla_typing 0
  • iphop 0
  • instrain 0
  • ichorcna 0
  • amptransformer 0
  • minhash 0
  • mask 0
  • pharmacogenetics 0
  • mapcounter 0
  • sequence analysis 0
  • hlala_typing 0
  • leviosam2 0
  • graph layout 0
  • tree 0
  • proportionality 0
  • SimpleAF 0
  • scaffolding 0
  • image_processing 0
  • rtgtools 0
  • registration 0
  • junctions 0
  • mitochondrion 0
  • runs_of_homozygosity 0
  • polish 0
  • scaffold 0
  • comparison 0
  • collate 0
  • cnvnator 0
  • nucleotides 0
  • multiallelic 0
  • contig 0
  • small variants 0
  • rgfa 0
  • duplicate 0
  • Read depth 0
  • tnhaplotyper2 0
  • Duplication purging 0
  • purge duplications 0
  • bam2fq 0
  • dict 0
  • cleaning 0
  • sequenzautils 0
  • cancer genomics 0
  • split_kmers 0
  • snpsift 0
  • snpeff 0
  • effect prediction 0
  • FracMinHash sketch 0
  • shigella 0
  • trgt 0
  • switch 0
  • ancient dna 0
  • Streptococcus pneumoniae 0
  • transformation 0
  • fixmate 0
  • rename 0
  • vcflib 0
  • seqtk 0
  • varcal 0
  • corrupted 0
  • vg 0
  • fusions 0
  • soft-clipped clusters 0
  • signature 0
  • reformatting 0
  • library 0
  • orf 0
  • anndata 0
  • pharokka 0
  • function 0
  • msisensor-pro 0
  • micro-satellite-scan 0
  • tumor 0
  • msi 0
  • instability 0
  • MSI 0
  • homoploymer 0
  • retrotransposons 0
  • long terminal repeat 0
  • long terminal retrotransposon 0
  • nextclade 0
  • kma 0
  • svdb 0
  • spatial_transcriptomics 0
  • resolve_bioscience 0
  • profiles 0
  • salmon 0
  • GC content 0
  • doublets 0
  • megan 0
  • checksum 0
  • mRNA 0
  • removal 0
  • gene labels 0
  • preseq 0
  • taxon tables 0
  • adapter 0
  • import 0
  • small genome 0
  • orthology 0
  • parallelized 0
  • variant pruning 0
  • bfiles 0
  • transcriptomic 0
  • screening 0
  • nacho 0
  • mudskipper 0
  • read-group 0
  • standardisation 0
  • ped 0
  • xz 0
  • nanostring 0
  • archive 0
  • COBS 0
  • k-mer index 0
  • bloom filter 0
  • GPU-accelerated 0
  • join 0
  • de novo assembler 0
  • otu tables 0
  • taxonomic profile 0
  • mash 0
  • ChIP-seq 0
  • awk 0
  • aggregate 0
  • evidence 0
  • demultiplexed reads 0
  • metagenomes 0
  • random forest 0
  • spatial_omics 0
  • regions 0
  • artic 0
  • interval list 0
  • heatmap 0
  • allele-specific 0
  • rna-seq 0
  • deseq2 0
  • blastp 0
  • panelofnormals 0
  • structural-variant calling 0
  • microbial 0
  • joint genotyping 0
  • NRPS 0
  • RiPP 0
  • proteome 0
  • version 0
  • gatk 0
  • settings 0
  • sra-tools 0
  • simulate 0
  • antibiotics 0
  • blastn 0
  • antismash 0
  • fasterq-dump 0
  • BAM 0
  • RNA-Seq 0
  • realignment 0
  • eido 0
  • secondary metabolites 0
  • concat 0
  • duplex 0
  • fetch 0
  • intersect 0
  • GEO 0
  • tbi 0
  • tab 0
  • metadata 0
  • norm 0
  • repeat_expansions 0
  • expansionhunterdenovo 0
  • metagenomic 0
  • microscopy 0
  • trim 0
  • identifier 0
  • normalize 0
  • UMIs 0
  • format 0
  • intersection 0
  • deconvolution 0
  • bayesian 0
  • samplesheet 0
  • validate 0
  • windows 0
  • eigenstrat 0
  • emboss 0
  • scatter 0
  • merge mate pairs 0
  • reads merging 0
  • short reads 0
  • xenograft 0
  • graft 0
  • reheader 0
  • unaligned 0
  • correction 0
  • filtermutectcalls 0
  • vdj 0
  • gwas 0
  • gem 0
  • CNV 0
  • MaltExtract 0
  • baf 0
  • HOPS 0
  • immunoprofiling 0
  • cnv calling 0
  • authentication 0
  • genomad 0
  • calling 0
  • allele 0
  • edit distance 0
  • parse 0
  • genome bins 0
  • estimation 0
  • eCLIP 0
  • cvnkit 0
  • single cells 0
  • recombination 0
  • Escherichia coli 0
  • sompy 0
  • genomecov 0
  • closest 0
  • peak picking 0
  • bamtobed 0
  • maskfasta 0
  • site frequency spectrum 0
  • rrna 0
  • ancestral alleles 0
  • quality assurnce 0
  • derived alleles 0
  • tnfilter 0
  • sorting 0
  • autozygosity 0
  • homozygosity 0
  • biallelic 0
  • getfasta 0
  • overlap 0
  • htseq 0
  • chunking 0
  • overlapped bed 0
  • simulation 0
  • hmmfetch 0
  • decompose 0
  • polya tail 0
  • fast5 0
  • multinterval 0
  • Read coverage histogram 0
  • qa 0
  • decompress 0
  • reverse complement 0
  • propd 0
  • array_cgh 0
  • transmembrane 0
  • vcf2bed 0
  • genome graph 0
  • tnseq 0
  • jaccard 0
  • decoy 0
  • shiftBed 0
  • topology 0
  • gprofiler2 0
  • rdtest 0
  • transform 0
  • variantcalling 0
  • deep variant 0
  • mutect 0
  • idx 0
  • sccmec 0
  • streptococcus 0
  • csi 0
  • spa 0
  • deduping 0
  • gaps 0
  • comparative genomics 0
  • introns 0
  • smaller fastqs 0
  • clumping fastqs 0
  • install 0
  • spatype 0
  • splice 0
  • joint-genotyping 0
  • genotypegvcf 0
  • background_correction 0
  • fracminhash sketch 0
  • BCF 0
  • spectral clustering 0
  • rdtest2vcf 0
  • rad 0
  • countsvtypes 0
  • cytosure 0
  • update header 0
  • vector 0
  • boxcox 0
  • baftest 0
  • gost 0
  • svtk/baftest 0
  • chromap 0
  • duplicate removal 0
  • short-read sequencing 0
  • sequence similarity 0
  • detecting svs 0
  • chromosome_visualization 0
  • structural variant 0
  • bam2fastx 0
  • bam2fastq 0
  • immcantation 0
  • airrseq 0
  • immunoinformatics 0
  • co-orthology 0
  • homology 0
  • region 0
  • crispr 0
  • sizes 0
  • vsearch/sort 0
  • umicollapse 0
  • postprocessing 0
  • cellpose 0
  • tblastn 0
  • extractunbinned 0
  • linkbins 0
  • mkvdjref 0
  • multiomics 0
  • ucsc/liftover 0
  • sintax 0
  • gtftogenepred 0
  • scRNA-Seq 0
  • usearch 0
  • refflat 0
  • long read alignment 0
  • pangenome-scale 0
  • all versus all 0
  • genepred 0
  • mashmap 0
  • bedtobigbed 0
  • wavefront 0
  • whamg 0
  • hifi 0
  • graph projection to vcf 0
  • bigbed 0
  • lua 0
  • upd 0
  • uniparental 0
  • disomy 0
  • snv 0
  • downsample 0
  • downsample bam 0
  • subsample bam 0
  • vcf2db 0
  • gemini 0
  • maf 0
  • compartments 0
  • construct 0
  • files 0
  • toml 0
  • cadd 0
  • vcfbreakmulti 0
  • uniq 0
  • deduplicate 0
  • domains 0
  • VCFtools 0
  • verifybamid 0
  • DNA contamination estimation 0
  • Assembly 0
  • wham 0
  • clr 0
  • antibody capture 0
  • chromosomal rearrangements 0
  • bioawk 0
  • createreadcountpanelofnormals 0
  • copyratios 0
  • denoisereadcounts 0
  • readwriter 0
  • dnamodelapply 0
  • Mycobacterium tuberculosis 0
  • dnascope 0
  • antigen capture 0
  • unionBedGraphs 0
  • workflow_mode 0
  • subtract 0
  • slopBed 0
  • groupby 0
  • tnscope 0
  • bgen 0
  • bases 0
  • chloroplast 0
  • confidence 0
  • calder2 0
  • blat 0
  • alr 0
  • eucaryotes 0
  • workflow 0
  • bedgraphtobigwig 0
  • adna 0
  • copy-number 0
  • copy number analysis 0
  • gender determination 0
  • copy number alterations 0
  • copy number variation 0
  • yahs 0
  • geo 0
  • sequencing adapters 0
  • mapad 0
  • transcroder 0
  • snakemake 0
  • c to t 0
  • element 0
  • sorted 0
  • cds 0
  • proteus 0
  • readproteingroups 0
  • eigenvectors 0
  • hicPCA 0
  • sliding 0
  • file manipulation 0
  • coding 0
  • illumiation_correction 0
  • assay 0
  • trimBam 0
  • tar 0
  • variant-calling 0
  • stardist 0
  • telseq 0
  • vsearch/dereplicate 0
  • vsearch/fastqfilter 0
  • fastqfilter 0
  • ATACseq 0
  • shift 0
  • ATACshift 0
  • setgt 0
  • jvarkit 0
  • translate 0
  • tarball 0
  • search engine 0
  • targz 0
  • installation 0
  • doCounts 0
  • bclconvert 0
  • nucBed 0
  • AT content 0
  • nucleotide content 0
  • elfasta 0
  • elprep 0
  • allele counts 0
  • controlstatistics 0
  • source tracking 0
  • emoji 0
  • poolseq 0
  • mass_error 0
  • nuclear contamination estimate 0
  • tag2tag 0
  • cgMLST 0
  • WGS 0
  • redundant 0
  • nanoq 0
  • Read filters 0
  • Read trimming 0
  • Read report 0
  • drug categorization 0
  • uniques 0
  • Illumina 0
  • functional 0
  • impute-info 0
  • tags 0
  • hashing-based deconvolution 0
  • multiqc 0
  • rank 0
  • java 0
  • script 0
  • xml 0
  • svg 0
  • standard 0
  • haplotag 0
  • staging 0
  • Staging 0
  • http(s) 0
  • utility 0
  • HLA 0
  • microRNA 0
  • quality_control 0
  • post Post-processing 0
  • featuretable 0
  • patterns 0
  • identity-by-descent 0
  • decomposeblocksub 0
  • block substitutions 0
  • pdb 0
  • run 0
  • updatedata 0
  • chip 0
  • partitioning 0
  • malformed 0
  • fix 0
  • paired reads re-pairing 0
  • regex 0
  • doublet 0
  • admixture 0
  • Immune Deconvolution 0
  • Bioinformatics Tools 0
  • Computational Immunology 0
  • catpack 0
  • prepare 0
  • mzML 0
  • taxonomic composition 0
  • antimicrobial reistance 0
  • contiguate 0
  • CRISPRi 0
  • 16S 0
  • hhsuite 0
  • hmmpress 0
  • adapterremoval 0
  • reference panels 0
  • doublet_detection 0
  • model 0
  • barcodes 0
  • subsetting 0
  • logFC 0
  • significance statistic 0
  • p-value 0
  • scvi 0
  • solo 0
  • import segmentation 0
  • nuclear segmentation 0
  • cell segmentation 0
  • relabel 0
  • resegment 0
  • morphology 0
  • hostile 0
  • mgi 0
  • decontamination 0
  • human removal 0
  • metagenome assembler 0
  • AMPs 0
  • antimicrobial peptide prediction 0
  • scanpy 0
  • amp 0
  • plotting 0
  • regtools 0
  • leafcutter 0
  • Staphylococcus aureus 0
  • affy 0
  • recovery 0
  • extraction 0
  • mass spectrometry 0
  • parallel 0
  • association 0
  • genotype likelihood 0
  • collapse 0
  • liftover 0
  • probabilistic realignment 0
  • seqfu 0
  • n50 0
  • cell_type_identification 0
  • cell_phenotyping 0
  • machine_learning 0
  • bacphlip 0
  • clahe 0
  • refresh 0
  • GWAS 0
  • hwe equilibrium 0
  • case/control 0
  • virulent 0
  • associations 0
  • spatial_neighborhoods 0
  • scimap 0
  • Bayesian 0
  • structural-variants 0
  • omics 0
  • biological activity 0
  • temperate 0
  • prior knowledge 0
  • tag 0
  • cell_barcodes 0
  • reference-independent 0
  • hwe statistics 0
  • go 0
  • r 0
  • bamUtil 0
  • plastid 0
  • resfinder 0
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Use k-mers to rapidly subtype S. enterica genomes

010

summary kmer_results simple_summary versions

Genotype Salmonella Typhi from Mykrobe results

01

tsv versions

genotyphi:

Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)

Salmonella serotype prediction from reads and assemblies

01

log tsv txt versions

Serovar prediction of salmonella assemblies

01

tsv allele_fasta allele_json cgmlst_csv versions

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